miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|91726832|gb|EB363714.1|EB363714 CATTTCCTTAAGGAAGGGTTTTTAGCGCTCGCCCTCCCCCACAGCGTAGCGGCGCGCGAGCGGGCCGGGCGGGCGGCCGA
GTTTTCCGAGAGATAAGTTGATCAAGATGTCCAGTGATAGGCAAAGGTCCGATGATGAGAGCCCCAGCACCAGCAGTGGC
AGTTCAGATGCGGACCAGCGAGACCCAGCCGCTCCAGAGCCTGAAGAGCAAGAAGAAAGGAAACCTGCCACCCAGCAGAA
GAAAAACACCAAACTCTCTAGCAAAACCACTGCTAAGTTATCCACTAGTGCTAAAAGAATTCAGAAGGAGCTAGCTGAAA
TAACCCTCGATCCTCCTCCTAACTGCAGTGCTGGGCCTAAAGGAGATAACATTTATGAATGGAGATCAACTATACTTGGT
CCACCAGGTTCTGTATATGAAGGTGGTGTGTTTTTTCTGGATATCACATTTTCATCAGATTATCCATTTAAGCCACCAAA
GGTTACTTTTCGTACCAGAATCTATCACTGCAACATCAACAGTCAGGGAGTCATCTGTCTGGATATCCTTAAAGACAACT
GGAGTCCTGCTTTGACTATTTCAAAGGTTTTGCTGTCTATTTGTTCCCTTTTGACAGACTGCAACCCTGCGGATCCTCTG
GTTGGAAGCATAGCCACTCAGTATTTGACCAACAGAGCAGAACATGACAGGATAGCCAGACAGTGGA




Most similar to sp|P52483|UB2E3_MOUSE

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|P52483|UB2E3_MOUSE Ubiquitin-conjugating enzyme E2 E3 OS=Mus
           musculus GN=Ube2e3 PE=1 SV=2
          Length = 207

 Score =  298 bits (764), Expect = 2e-80
 Identities = 153/201 (76%), Positives = 153/201 (76%), Gaps = 1/201 (0%)
 Frame = +2

Query: 107 MSSDRQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKP-ATQQKKNXXXXXXXXXXXX 283
           MSSDRQR                               KP ATQQKKN            
Sbjct: 1   MSSDRQRSDDESPSTSSGSSDADQRDPAAPEPEEQEERKPSATQQKKNTKLSSKTTAKLS 60

Query: 284 XXXXRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSSDY 463
               RIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSSDY
Sbjct: 61  TSAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSSDY 120

Query: 464 PFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLV 643
           PFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLV
Sbjct: 121 PFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLV 180

Query: 644 GSIATQYLTNRAEHDRIARQW 706
           GSIATQYLTNRAEHDRIARQW
Sbjct: 181 GSIATQYLTNRAEHDRIARQW 201